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namedescription
ROOT/contenido/classes Contains one file for each CONTENIDO class.
ROOT/contenido/cronjobs Cron or pseudocron jobs are located in this folder.
ROOT/contenido/external External tools liek CodeMirror or TinyMCE can be found here. TODO the folders backendedit and frontend have to be described.
ROOT/contenido/images 
ROOT/contenido/includes 
ROOT/contenido/jar 
ROOT/contenido/plugins 
ROOT/contenido/scripts 
ROOT/contenido/styles 
ROOT/contenido/templates 
ROOT/contenido/templates_c 
ROOT/contenido/tools Command line tools
ROOT/contenido/xml 

Data

namedescription
ROOT/data/cacheThis folder is used for caching of client independant files that are created by some plugins (e.g. PIFA or PIXI) and modules. Also the CONTENIDO UpdateNotifier uses this folder for its files. TODO check if there are other purposes.
ROOT/data/configClient independant configuration files are located in this folder.
ROOT/data/cronlogWhen cronjobs are setup, these usually store *.job-files containing a timestamp in this folder to signal that and when they have been run last.
ROOT/data/localeThis folder contains gettext files used to localize the CONTENIDO backend.
ROOT/data/logsDepending upon configuration settings some log files are maintained that can be found in this folder.
ROOT/data/tempTODO I have no clue

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